Deus Ex 3: Unravelling the Conspiracy

Kieron Gillen of Rock, Paper, Shotgun digs into the sparse material available of Deus Ex 3 to unravel all clues in an article called Unravelling the Conspiracy, though I'm not sure what he means by "with Bioshock 2 at least a couple of years away, this is the next hope for a hefty immersive sim".
Second element worth taking apart is the subliminals in the trailer, flashed too rapidly for the human eye to follow. Shacknews, bless their cotton socks, grabbed them all and put them in a gallery, which you can view here.

In the wikipedia age, bright sparks have already identified most of them. Taken from Wikipedia, the current list is.

* Leonardo Da Vinci's application of the golden ratio to the human head
* A diagram of a logarithmic golden spiral whose growth factor is related to φ
* A drawing of a golden triangle and the golden function written inside it
* The title page of De human corporis fabrica liborum epitome by Vesalius, an image showing an Anatomical Theatre
* Anatomy Lesson of Dr. Nicolaes Tulp by Rembrandt
* An unknown image
* Augmentation detail
* Lament For Icarus by Herbert James Draper
* An x-ray image of a human chest
* Two USG images of the biomodified fetus
* An x-ray image of a human skull
* An image of a couple, with the girl having a mechanical arm
* Prosthetic limbs in a box
* A ballot box for (Biopolitic Vote 2027″,with a voting card with a red X being inserted in it
* A sign saying '˜Augmented people enter from the back'
* A sign saying '˜We do not welcome augmented people here'
* A blurred picture of a street with demonstrants
* Photo of riot police
* An unknown building with a demonstrafion in front of it. One of the demonstrants holds a sign saying '˜No augs'
* Roman numbers III, IV, V and VI, possibly a reference to the decalogue
* A lowercase italic letter '˜h' and a plus sign in brackets, a symbol used for Transhumanism.